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1

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Bowers, Robert M, Kyrpides, Nikos C, Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T B K, Schulz, Frederik, Jarett, Jessica, Rivers, Adam R, Eloe-Fadrosh, Emiley A, Tringe, Susanna

Journal:

Nature Biotechnology

Année:

2018

Langue:

english

Fichier:

PDF, 67 KB

english, 2018

2

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Bowers, Robert M, Kyrpides, Nikos C, Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T B K, Schulz, Frederik, Jarett, Jessica, Rivers, Adam R, Eloe-Fadrosh, Emiley A, Tringe, Susanna

Journal:

Nature Biotechnology

Année:

2017

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2017

3

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Bowers, Robert M, Kyrpides, Nikos C, Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T B K, Schulz, Frederik, Jarett, Jessica, Rivers, Adam R, Eloe-Fadrosh, Emiley A, Tringe, Susanna

Journal:

Nature Biotechnology

Année:

2018

Langue:

english

Fichier:

PDF, 71 KB

english, 2018

4

Coselection for microbial resistance to metals and antibiotics in freshwater microcosms

Ramunas Stepanauskas, Travis C. Glenn, Charles H. Jagoe, R. Cary Tuckfield, Angela H. Lindell, Catherine J. King, J. V. McArthur

Journal:

Environmental Microbiology

Année:

2006

Langue:

english

Fichier:

PDF, 237 KB

english, 2006

5

Co-selection of antibiotic and metal resistance

Craig Baker-Austin, Meredith S. Wright, Ramunas Stepanauskas, J.V. McArthur

Journal:

Trends in Microbiology

Année:

2006

Langue:

english

Fichier:

PDF, 149 KB

english, 2006

6

High DON Bioavailability in Boreal Streams during a Spring Flood

Ramunas Stepanauskas, Hjalmar Laudon and Niels O. G. Jorgensen

Journal:

Limnology and Oceanography

Année:

2000

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2000

7

Strategies to improve reference databases for soil microbiomes

Choi, Jinlyung, Yang, Fan, Stepanauskas, Ramunas, Cardenas, Erick, Garoutte, Aaron, Williams, Ryan, Flater, Jared, Tiedje, James M, Hofmockel, Kirsten S, Gelder, Brian, Howe, Adina

Journal:

The ISME Journal

Année:

2017

Langue:

english

Fichier:

PDF, 886 KB

english, 2017

8

A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments

Munson-McGee, Jacob H., Peng, Shengyun, Dewerff, Samantha, Stepanauskas, Ramunas, Whitaker, Rachel J., Weitz, Joshua S., Young, Mark J.

Journal:

The ISME Journal

Année:

2018

Langue:

english

Fichier:

PDF, 1002 KB

english, 2018

9

Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere

Carr, Stephanie A., Jungbluth, Sean P., Eloe-Fadrosh, Emiley A., Stepanauskas, Ramunas, Woyke, Tanja, Rappé, Michael S., Orcutt, Beth N.

Journal:

The ISME Journal

Année:

2019

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2019

10

Pangenomics Analysis Reveals Diversification of Enzyme Families and Niche Specialization in Globally Abundant SAR202 Bacteria

Saw, Jimmy H. W., Nunoura, Takuro, Hirai, Miho, Takaki, Yoshihiro, Parsons, Rachel, Michelsen, Michelle, Longnecker, Krista, Kujawinski, Elizabeth B., Stepanauskas, Ramunas, Landry, Zachary, Carlson,

Journal:

Année:

2020

Fichier:

PDF, 4.05 MB

2020

11

Multi-site Analysis Reveals Widespread Antibiotic Resistance in the Marine PathogenVibrio vulnificus

Craig Baker-Austin, J. V. McArthur, Angela H. Lindell, Meredith S. Wright, R. Cary Tuckfield, Jan Gooch, Liza Warner, James Oliver, Ramunas Stepanauskas

Journal:

Microbial Ecology

Année:

2009

Langue:

english

Fichier:

PDF, 220 KB

english, 2009

12

Sources, bioavailability, and photoreactivity of dissolved organic carbon in the Sacramento–San Joaquin River Delta

Ramunas Stepanauskas, Mary Ann Moran, Brian A. Bergamaschi, James T. Hollibaugh

Journal:

Biogeochemistry

Année:

2005

Langue:

english

Fichier:

PDF, 414 KB

english, 2005

13

Biomass of pelagic fungi in Baltic rivers

Niels O. G. Jørgensen, Ramunas Stepanauskas

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 271 KB

english, 2009

14

Bacterial tolerances to metals and antibiotics in metal-contaminated and reference streams

Meredith S. Wright, Gretchen Loeffler Peltier, Ramunas Stepanauskas, J Vaun McArthur

Journal:

FEMS Microbiology Ecology

Année:

2006

Langue:

english

Fichier:

PDF, 173 KB

english, 2006

15

Influence of industrial contamination on mobile genetic elements: class 1 integron abundance and gene cassette structure in aquatic bacterial communities

Wright, Meredith S, Baker-Austin, Craig, Lindell, Angela H, Stepanauskas, Ramunas, Stokes, Hatch W, McArthur, J Vaun

Journal:

The ISME Journal

Année:

2008

Langue:

english

Fichier:

PDF, 275 KB

english, 2008

16

Capturing diversity of marine heterotrophic protists: one cell at a time

Heywood, Jane L, Sieracki, Michael E, Bellows, Wendy, Poulton, Nicole J, Stepanauskas, Ramunas

Journal:

The ISME Journal

Année:

2010

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2010

17

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton

Martinez-Garcia, Manuel, Swan, Brandon K, Poulton, Nicole J, Gomez, Monica Lluesma, Masland, Dashiell, Sieracki, Michael E, Stepanauskas, Ramunas

Journal:

The ISME Journal

Année:

2011

Langue:

english

Fichier:

PDF, 790 KB

english, 2011

18

Landscape scale controls on the vascular plant component of dissolved organic carbon across a freshwater delta

Robert S. Eckard, Peter J. Hernes, Brian A. Bergamaschi, Ramunas Stepanauskas, Carol Kendall

Journal:

Geochimica et Cosmochimica Acta

Année:

2007

Langue:

english

Fichier:

PDF, 430 KB

english, 2007

19

Genomic sequencing of single microbial cells from environmental samples

Thomas Ishoey, Tanja Woyke, Ramunas Stepanauskas, Mark Novotny, Roger S Lasken

Journal:

Current Opinion in Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2008

20

Assessing the contribution of wetlands and subsided islands to dissolved organic matter and disinfection byproduct precursors in the Sacramento–San Joaquin River Delta: A geochemical approach

Tamara E.C. Kraus, Brian A. Bergamaschi, Peter J. Hernes, Robert G.M. Spencer, Ramunas Stepanauskas, Carol Kendall, Richard F. Losee, Roger Fujii

Journal:

Organic Geochemistry

Année:

2008

Langue:

english

Fichier:

PDF, 926 KB

english, 2008

21

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing

Martinez-Garcia, Manuel, Brazel, David, Poulton, Nicole J, Swan, Brandon K, Gomez, Monica Lluesma, Masland, Dashiell, Sieracki, Michael E, Stepanauskas, Ramunas

Journal:

The ISME Journal

Année:

2012

Langue:

english

Fichier:

PDF, 406 KB

english, 2012

22

Cell sorting analysis of geographically separated hypersaline environments

Zhaxybayeva, Olga, Stepanauskas, Ramunas, Mohan, Nikhil Ram, Papke, R. Thane

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 599 KB

english, 2013

23

Single cell genomics: an individual look at microbes

Ramunas Stepanauskas

Journal:

Current Opinion in Microbiology

Année:

2012

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2012

24

New Abundant Microbial Groups in Aquatic Hypersaline Environments

Ghai, Rohit, Pašić, Lejla, Fernández, Ana Beatriz, Martin-Cuadrado, Ana-Belen, Mizuno, Carolina Megumi, McMahon, Katherine D., Papke, R. Thane, Stepanauskas, Ramunas, Rodriguez-Brito, Beltran, Rohwer,

Journal:

Scientific Reports

Année:

2011

Langue:

english

Fichier:

PDF, 2.27 MB

english, 2011

25

Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton

Garcia, Sarahi L, McMahon, Katherine D, Martinez-Garcia, Manuel, Srivastava, Abhishek, Sczyrba, Alexander, Stepanauskas, Ramunas, Grossart, Hans-Peter, Woyke, Tanja, Warnecke, Falk

Journal:

The ISME Journal

Année:

2013

Langue:

english

Fichier:

PDF, 592 KB

english, 2013

26

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

Wasmund, Kenneth, Schreiber, Lars, Lloyd, Karen G, Petersen, Dorthe G, Schramm, Andreas, Stepanauskas, Ramunas, Jørgensen, Bo Barker, Adrian, Lorenz

Journal:

The ISME Journal

Année:

2014

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2014

27

Predominant archaea in marine sediments degrade detrital proteins

Lloyd, Karen G., Schreiber, Lars, Petersen, Dorthe G., Kjeldsen, Kasper U., Lever, Mark A., Steen, Andrew D., Stepanauskas, Ramunas, Richter, Michael, Kleindienst, Sara, Lenk, Sabine, Schramm, Andreas

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 496 KB

english, 2013

28

Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade

Zaremba-Niedzwiedzka, Katarzyna, Viklund, Johan, Zhao, Weizhou, Ast, Jennifer, Sczyrba, Alexander, Woyke, Tanja, McMahon, Katherina, Bertilsson, Stefan, Stepanauskas, Ramunas, Andersson, Siv G E

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 708 KB

english, 2013

29

Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics

Rinke, Christian, Lee, Janey, Nath, Nandita, Goudeau, Danielle, Thompson, Brian, Poulton, Nicole, Dmitrieff, Elizabeth, Malmstrom, Rex, Stepanauskas, Ramunas, Woyke, Tanja

Journal:

Nature Protocols

Année:

2014

Langue:

english

Fichier:

PDF, 839 KB

english, 2014

30

Comparing effective population sizes of dominant marine alphaproteobacteria lineages

Luo, Haiwei, Swan, Brandon K., Stepanauskas, Ramunas, Hughes, Austin L., Moran, Mary Ann

Journal:

Environmental Microbiology Reports

Année:

2014

Langue:

english

Fichier:

PDF, 205 KB

english, 2014

31

Single-cell genomics shedding light on marine Thaumarchaeota diversification

Luo, Haiwei, Tolar, Bradley B, Swan, Brandon K, Zhang, Chuanlun L, Stepanauskas, Ramunas, Ann Moran, Mary, Hollibaugh, James T

Journal:

The ISME Journal

Année:

2014

Langue:

english

Fichier:

PDF, 684 KB

english, 2014

32

Multi-Site Analysis Reveals Widespread Antibiotic Resistance in the Marine Pathogen Vibrio vulnificus

Craig Baker-Austin, J. V. McArthur, Angela H. Lindell, Meredith S. Wright, R. Cary Tuckfield, Jan Gooch, Liza Warner, James Oliver and Ramunas Stepanauskas

Journal:

Microbial Ecology

Année:

2009

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2009

33

Bioavailability of Wetland-Derived DON to Freshwater and Marine Bacterioplankton

Ramunas Stepanauskas, Lars Leonardson and Lars J. Tranvik

Journal:

Limnology and Oceanography

Année:

1999

Langue:

english

Fichier:

PDF, 1.39 MB

english, 1999

34

Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters

Luo, Haiwei, Swan, Brandon K, Stepanauskas, Ramunas, Hughes, Austin L, Moran, Mary Ann

Journal:

The ISME Journal

Année:

2014

Langue:

english

Fichier:

PDF, 661 KB

english, 2014

35

Elevated Microbial Tolerance to Metals and Antibiotics in Metal-Contaminated Industrial Environments

Stepanauskas, Ramunas, Glenn, Travis C., Jagoe, Charles H., Tuckfield, R. Cary, Lindell, Angela H., McArthur, JV.

Journal:

Environmental Science & Technology

Année:

2005

Langue:

english

Fichier:

PDF, 609 KB

english, 2005

36

Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum ‘Diapherotrites’

Youssef, Noha H, Rinke, Christian, Stepanauskas, Ramunas, Farag, Ibrahim, Woyke, Tanja, Elshahed, Mostafa S

Journal:

The ISME Journal

Année:

2015

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2015

37

Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount

Field, Erin K, Sczyrba, Alexander, Lyman, Audrey E, Harris, Christopher C, Woyke, Tanja, Stepanauskas, Ramunas, Emerson, David

Journal:

The ISME Journal

Année:

2014

Langue:

english

Fichier:

PDF, 2.57 MB

english, 2014

38

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype

Cameron Thrash, J, Temperton, Ben, Swan, Brandon K, Landry, Zachary C, Woyke, Tanja, DeLong, Edward F, Stepanauskas, Ramunas, Giovannoni, Stephan J

Journal:

The ISME Journal

Année:

2014

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2014

39

Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics

Eiler, Alexander, Zaremba-Niedzwiedzka, Katarzyna, Martínez-García, Manuel, McMahon, Katherine D., Stepanauskas, Ramunas, Andersson, Siv G. E., Bertilsson, Stefan

Journal:

Environmental Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 762 KB

english, 2014

40

High DON bioavailability in boreal streams during a spring flood

Stepanauskas, Ramūnas, Laudon, Hjalmar, Jørgensen, Niels O. G.

Journal:

Limnology and Oceanography

Année:

2000

Langue:

english

Fichier:

PDF, 165 KB

english, 2000

41

Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution

Martijn, Joran, Schulz, Frederik, Zaremba-Niedzwiedzka, Katarzyna, Viklund, Johan, Stepanauskas, Ramunas, Andersson, Siv G E, Horn, Matthias, Guy, Lionel, Ettema, Thijs J G

Journal:

The ISME Journal

Année:

2015

Langue:

english

Fichier:

PDF, 3.43 MB

english, 2015

42

Hidden Diversity in Honey Bee Gut Symbionts Detected by Single-Cell Genomics

Engel, Philipp, Stepanauskas, Ramunas, Moran, Nancy A., Richardson, Paul M.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2014

43

Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton

Labonté, Jessica M, Swan, Brandon K, Poulos, Bonnie, Luo, Haiwei, Koren, Sergey, Hallam, Steven J, Sullivan, Matthew B, Woyke, Tanja, Eric Wommack, K, Stepanauskas, Ramunas

Journal:

The ISME Journal

Année:

2015

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2015

44

Re-defining microbial diversity from its single-celled building blocks

Stepanauskas, Ramunas

Journal:

Environmental Microbiology Reports

Année:

2015

Langue:

english

Fichier:

PDF, 62 KB

english, 2015

45

Bioavailability of wetland-derived DON to freshwater and marine bacterioplankton

Stepanauskas, Ramunas, Leonardson, Lars, Tranvik, Lars J.

Journal:

Limnology and Oceanography

Année:

1999

Langue:

english

Fichier:

PDF, 136 KB

english, 1999

46

Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus Distribution across Yellowstone National Park Hot Springs

Munson-McGee, Jacob H., Field, Erin K., Bateson, Mary, Rooney, Colleen, Stepanauskas, Ramunas, Young, Mark J., Wommack, K. E.

Journal:

Applied and Environmental Microbiology

Année:

2015

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2015

47

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments

Dyksma, Stefan, Bischof, Kerstin, Fuchs, Bernhard M, Hoffmann, Katy, Meier, Dimitri, Meyerdierks, Anke, Pjevac, Petra, Probandt, David, Richter, Michael, Stepanauskas, Ramunas, Mußmann, Marc

Journal:

The ISME Journal

Année:

2016

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2016

48

Ecological Genomics of the Uncultivated Marine Roseobacter Lineage CHAB-I-5

Zhang, Yao, Sun, Ying, Jiao, Nianzhi, Stepanauskas, Ramunas, Luo, Haiwei

Journal:

Applied and Environmental Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 1.47 MB

english, 2016

49

Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi ) in Sulfur Cycling

Wasmund, Kenneth, Cooper, Myriel, Schreiber, Lars, Lloyd, Karen G., Baker, Brett J., Petersen, Dorthe G., Jørgensen, Bo Barker, Stepanauskas, Ramunas, Reinhardt, Richard, Schramm, Andreas, Loy, Alexan

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 9.48 MB

english, 2016

50

Diversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines

Ngugi, David Kamanda, Blom, Jochen, Stepanauskas, Ramunas, Stingl, Ulrich

Journal:

The ISME Journal

Année:

2015

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2015